Title Prof. First Name ASHEESH Last Name SHANKER
Designation Professor
Department Department of Bioinformatics
Email asheesh@cusb.ac.in
Webpage
Phone.no 9414478655
Employement Info
Employee Type Nature Of Employment
Teaching Permanent
Educational Qualifications
Degree/Certification Name Institution Year of Completion
Ph.D. - PhD Banasthali Vidyapith 2010
PG Chaudhary Charan Singh University, Meerut 2003
UG Gurukula Kangri Vishwavidyalaya, Haridwar 2000
HSC UP Board 1997
SSC UP Board 1995
Research Supervision Overview
PhD Scholars Supervised PhD Degrees Awarded Theses Submitted
1 2 0
M.Phil Scholars Supervised M.Phil Degrees Awarded M.Phil Theses Submitted
0 10 0
Research Publications
Title of Article Type of Publication Name of Journal ISSN Journal Volume Year Link to Article DOI (Digital Object Identifier)
Neoantigen identification and dendritic cell-based vaccine for lung cancer immunotherapy Review Articles Vaccines 2076-393X 12 2024 https://www.mdpi.com/2076-393X/12/5/498#:~:text=Highly%20immunogenic%20NeoAgs%20provide%20personalized,and%20safe%20in%20clinical%20trials. 10.3390/vaccines12050498
Partial genomic characterization of Chromobacterium piscinae from India reveals multi drug resistance Research Papers in Peer Reviewed Journals Brazilian Journal of Microbiology 1678-4405 2024 https://link.springer.com/article/10.1007/s42770-024-01288-z 10.1007/s42770-024-01288-z
Coevolution-based computational approach to detect resistance mechanism of epidermal growth factor receptor Research Papers in Peer Reviewed Journals Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1879-2596 1871 2023 https://www.sciencedirect.com/science/article/abs/pii/S0167488923001659 10.1016/j.bbamcr.2023.119592
Coevolution based immunoinformatics approach considering variability of epitopes to combat different strains: A case study using spike protein of SARS-CoV-2 Research Papers in Peer Reviewed Journals Computers in Biology and Medicine 1879-0534 163 2023 https://www.sciencedirect.com/science/article/pii/S0010482523006984 10.1016/j.compbiomed.2023.107233
Cloning and functional characterization of arsenite oxidase (aoxB) gene associated with arsenic transformation in Pseudomonas sp. strain AK9 Research Papers in Peer Reviewed Journals Gene 1879-0038 850 2022 https://www.sciencedirect.com/science/article/abs/pii/S0378111922007466 10.1016/j.gene.2022.146926
AutomAted RepeaT Identifier (AARTI): A tool to identify common, polymorphic, and unique microsatellites Research Papers in Peer Reviewed Journals Mitochondrion 1872-8278 65 2022 https://www.sciencedirect.com/science/article/abs/pii/S1567724922000502 10.1016/j.mito.2022.06.002
pSATdb: a database of mitochondrial common, polymorphic, and unique microsatellites Research Papers in Peer Reviewed Journals Life Science Alliance 2575-1077 5 2022 https://www.life-science-alliance.org/content/5/6/e202101307 10.26508/lsa.202101307
Coevolutionary forces shaping the fitness of SARS-CoV-2 spike glycoprotein against human receptor ACE2 Research Papers in Peer Reviewed Journals Infection, Genetics and Evolution 1567-7257 87 2020 https://www.sciencedirect.com/science/article/pii/S1567134820304779 10.1016/j.meegid.2020.104646
Genome wide annotation and characterization of young, intact long terminal repeat retrotransposons (In-LTR-RTs) of seven legume species Research Papers in Peer Reviewed Journals Genetica 1573-6857 148 2020 https://link.springer.com/article/10.1007/s10709-020-00103-5 10.1007/s10709-020-00103-5
Length variation of chloroplast simple sequence repeats in the genus Eucalyptus L'Hér Research Papers in Peer Reviewed Journals Plant Science Today 2348-1900 7 2020 https://horizonepublishing.com/journals/index.php/PST/article/view/750 10.14719/pst.2020.7.3.750
Mining of microsatellites in mitochondrial genomes of order Hypnales (Bryopsida) Research Papers in Peer Reviewed Journals Plant Science Today 2348-1900 6(sp1) 2019 https://horizonepublishing.com/journals/index.php/PST/article/view/697 10.14719/pst.2019.6.sp1.697
Phylogeny of actin and tubulin gene homologs in diverse eukaryotic species Research Papers in Peer Reviewed Journals INDIAN JOURNAL OF GENETICS AND PLANT BREEDING 0975-6906 79(Sup-01) 2019 https://www.isgpb.org/article/phylogeny-of-actin-and-tubulin-gene-homologs-in-diverse-eukaryotic-species 10.31742/IJGPB.79S.1.20
Quantum Curcumin mediated inhibition of gingipains and mixed-biofilm of Porphyromonas gingivalis causing chronic periodontitis Research Papers in Peer Reviewed Journals RSC Advances 2046-2069 8 2018 https://pubs.rsc.org/en/content/articlelanding/2018/ra/c8ra08435a 10.1039/c8ra08435a
Groups of coevolving positions provide drug resistance to Mycobacterium tuberculosis: a study using targets of first-line antituberculosis drugs Research Papers in Peer Reviewed Journals International journal of antimicrobial agents 0924-8579 53 2018 https://www.sciencedirect.com/science/article/abs/pii/S092485791830325X 10.1016/j.ijantimicag.2018.10.027
Structural basis for drug resistance mechanisms against anaplastic lymphoma kinase Research Papers in Peer Reviewed Journals Journal of Cellular Biochemistry 1097-4644 120 2018 https://onlinelibrary.wiley.com/doi/abs/10.1002/jcb.27437#:~:text=Drug%20resistance%20to%20anaplastic%20lymphoma,encoding%20kinase%20domain%20of%20ALK. 10.1002/jcb.27437
Mining and analysis of simple sequence repeats in the chloroplast genomes of genus Vigna. 2: Research Papers in Peer Reviewed Journals Biotechnology Research and Innovation 2452-0721 2 2018 http://www.biori.periodikos.com.br/article/10.1016/j.biori.2018.08.001/pdf/biori-2-1-9.pdf 10.1016/j.biori.2018.08.001
Bioinformatics analysis of a novel Glutaredoxin gene segment from a hot spring metagenomic DNA library Research Papers in Peer Reviewed Journals Meta Gene 2214-5400 18 2018 https://www.sciencedirect.com/science/article/pii/S2214540018301658 10.1016/j.mgene.2018.08.007
Hydro-priming methods for initiation of metabolic process and synchronization of germination in mung bean (Vigna radiata L.) seeds Research Papers in Peer Reviewed Journals Journal of Crop Science and Biotechnology 1975-9479 21 2018 https://link.springer.com/article/10.1007/s12892-018-0017-0 10.1007/s12892-018-0017-0
Predicting neurological adverse drug reactions based on biological, chemical and phenotypic properties of drugs using machine learning models Research Papers in Peer Reviewed Journals Nature Scientific Reports 2045-2322 7 2017 https://www.nature.com/articles/s41598-017-00908-z 10.1038/s41598-017-00908-z
Structural basis for drug resistance mechanisms against EGFR Research Papers in Peer Reviewed Journals Current Topics in Medicinal Chemistry 1568-0266 17 2017 https://www.eurekaselect.com/article/83065 10.2174/1568026617666170427093609
Machine learning and molecular dynamics based insights into mode of actions of insulin degrading enzyme modulators Research Papers in Peer Reviewed Journals Combinatorial Chemistry and High Throughput Screening 20 2017 https://www.eurekaselect.com/article/81379 10.2174/1386207320666170130144443
Computational screening and exploration of disease-associated genes in Alzheimer’s disease Research Papers in Peer Reviewed Journals Journal of Cellular Biochemistry 0730-2312 118 2016 https://onlinelibrary.wiley.com/doi/10.1002/jcb.25806 10.1002/jcb.25806
Integrating network, sequence and functional features using machine learning approaches towards identification of novel Alzheimer genes Research Papers in Peer Reviewed Journals BMC Genomics 1471-2164 17 2016 https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3108-1 10.1186/s12864-016-3108-1
Identification of common, unique and polymorphic microsatellites among 73 cyanobacterial genomes Research Papers in Peer Reviewed Journals World Journal of Microbiology and Biotechnology 0959-3993 32 2016 https://link.springer.com/article/10.1007/s11274-016-2061-0 https://link.springer.com/article/10.1007/s11274-016-2061-0
ProTSAV: A protein tertiary structure analysis and validation server Research Papers in Peer Reviewed Journals Biochimica et Biophysica Acta - Proteins and Proteomics 1570-9639 1864 2015 https://www.sciencedirect.com/science/article/abs/pii/S1570963915002605 10.1016/j.bbapap.2015.10.004
An update on sequenced chloroplast genomes of Bryophytes Research Papers in Peer Reviewed Journals Plant Science Today 2348-1900 2 2015 https://horizonepublishing.com/journals/index.php/PST/article/view/143 10.14719/pst.2015.2.4.143
Checking the STEP-associated trafficking and internalization of glutamate receptors for reduced cognitive deficits: A machine learning approach-based cheminformatics study and its application for drug repurposing Research Papers in Peer Reviewed Journals Plos One 1932-6203 10 2015 https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0129370 10.1371/journal.pone.0129370
Structural investigations of T854A mutation in EGFR and identification of novel inhibitors using structure activity relationships Research Papers in Peer Reviewed Journals BMC Genomics 1471-2164 16(Suppl 5) 2015 https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-16-S5-S8 10.1186/1471-2164-16-S5-S8
Identification of simple sequence repeats in chloroplast genomes of Magnoliids through bioinformatics approach Research Papers in Peer Reviewed Journals Interdisciplinary Sciences: Computational Life Sciences 1913-2751 8 2015 https://link.springer.com/article/10.1007/s12539-015-0129-4 10.1007/s12539-015-0129-4
ChloroSSRdb: a repository of perfect and imperfect chloroplastic simple sequence repeats (cpSSRs) of green plants Research Papers in Peer Reviewed Journals Database : the journal of biological databases and curation 1758-0463 2014 2014 https://academic.oup.com/database/article/doi/10.1093/database/bau107/2635401 10.1093/database/bau107
Production and partial characterization of extracellular protease from Bacillus sp. GJP2 isolated from a hot spring Research Papers in Peer Reviewed Journals Proceedings of the National Academy of Sciences, India Section B: Biological Sciences 0369-0821 86 2014 https://link.springer.com/article/10.1007/s40011-014-0434-4 10.1007/s40011-014-0434-4
MitoSatPlant: Mitochondrial microsatellites database of viridiplantae Research Papers in Peer Reviewed Journals Mitochondrion 1567-7249 19 2014 https://www.sciencedirect.com/science/article/abs/pii/S1567724914000166 10.1016/j.mito.2014.02.002
Genome research in the cloud Research Papers in Peer Reviewed Journals OMICS A Journal of Integrative Biology 1536-2310 16 2012 https://www.liebertpub.com/doi/abs/10.1089/omi.2012.0001?journalCode=omi 10.1089/omi.2012.000
Phylogenomic evidence of bryophytes’ monophyly using complete and incomplete data sets from chloroplast proteomes Research Papers in Peer Reviewed Journals Journal of Plant Biochemistry and Biotechnology 0971-7811 20 2011 https://link.springer.com/article/10.1007/s13562-011-0054-5 10.1007/s13562-011-0054-5
Annotation Jargon- It’s not too late to correct it Research Papers in Peer Reviewed Journals Current Science 0011-3891 97 2009 https://www.currentscience.ac.in/Volumes/97/07/0983.pdf
Bioinformatically mined simple sequence repeats in UniGenes of Citrus sinensis Research Papers in Peer Reviewed Journals Scientia Horticulturae 0304-4238 113 2007 https://www.sciencedirect.com/science/article/abs/pii/S0304423807001598 10.1016/j.scienta.2007.04.011
In silico mining in expressed sequences of Neurospora crassa for identification and abundance of microsatellites Research Papers in Peer Reviewed Journals Microbiological Research 0944-5013 162 2006 https://www.sciencedirect.com/science/article/pii/S0944501306000619 10.1016/j.micres.2006.05.012
Non-Journal Publications
Title of Publication Type of Publication Publisher Role ISBN Year Link to Publication Level
Bioinformatics: Sequences, Structures, Phylogeny Edited/Translated Books Springer Nature Singapore Pte Ltd Editor 978-981-1315619 2018 https://link.springer.com/book/10.1007/978-981-13-1562-6 International
Sharma V, Munjal A, Shanker A (2008; 2016 IInd Edition) . , Meerut, India, p. 260 (ISBN 978-81-7133-917-4); IInd Edition p. 350 (ISBN 978-93-5078-142-5) Text/Reference/Subject Books/Other Rastogi Publications Author 978-93-5078-142-5 2016 National
The programming language "Perl" for Biologists: Solutions for Beginners Text/Reference/Subject Books/Other GRIN Verlag GmbH, Germany Author 978-3-656-90770-1 2015 International
Evolutionary analysis of plants using chloroplast proteome sequences Text/Reference/Subject Books/Other LAP Germany Author 978-3-8473-7563-0 2012 International
Research Projects
Project Title Project Type Year Of Sanction Outcome/Output Duration
Establishment of a server to compare small genomes/proteomes and generate concatenated gene/protein sequences dataset to be used in phylogenetic tree reconstruction Major 2013 Publications 01-04-2013 To 20-12-2015 (2 years, 8 months, 19 days)
Comparison of chloroplast proteomes of bryophytes and pteridophytes to identify orthologous proteins and transition link between both lineages Minor 2009 Publication 01-05-2009 To 31-01-2010 (8 months, 30 days)
Fund for Improvement of S&T Infrastructure in Universities and Higher Educational Institutions Major 2024 Ongoing Ongoing since 29-01-2024 (2 years, 1 months, 13 days)
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