Title Prof. First Name PARBATI Last Name BISWAS
Designation Senior Professor
Department Department of Chemistry
Email
Webpage
Phone.no 011-27666646
Employement Info
Employee Type Nature Of Employment
Teaching Permanent
Educational
Degree/Certification Institution Year
Ph.D. - Generalized Random Walk Models of Chain Statistics Indian Institute of Science 1996
PG University of Calcutta 1989
Qualifications
Examination Name Conducted By Date of Passing
NET CSIR-UGC 1991-07-29
Fellowship
Fellowship Name Fellowship Body Level
Alexander von Humboldt Stiftung Alexander von Humboldt Foundation International
Engineering and Physical Sciences Research Council U.K. Research and Innovation International
Fellow Academies
Academy Name Name Of Award Year Of Award
Indian Academy of Sciences, Bangalore Elected Fellow 2023
Research Guidance
PhD scholars under Supervision Awarded PhD Submitted
2 14
M.Phil Scholars – Under Supervision Awarded Degree Submitted
1
Research Publications
Article Name Publication Type Journal Name ISSN No Volume Year URL DOI
1. Segmental Mobility of Ring Polymers in Good and Poor Solvents Research Papers in Peer Reviewed Journals Macromolecules 0024-9297 55 2022 pubs.acs.org/Macromolecules 10.1021/acs.macromol.1c02169

2. Analysis of the Passage Times for Unfolding/Folding of the Adenine Riboswitch Aptamer. Research Papers in Peer Reviewed Journals ACS Physical Chemistry Au 2694-2445 2 2022 pubs.acs.org/physchemau 10.1021/acsphyschemau.1c00056

3. Predicting Protein Shelf Lives from Mean First Passage Times. Research Papers in Peer Reviewed Journals Chemical Physics Letters 0009-2614 792 2022 www.elsevier.com/locate/cplett 10.1016/j.cplett.2022.139426

4. Hydration Thermodynamics of the N-terminal FAD Mutants of Amyloid-ꞵ. Research Papers in Peer Reviewed Journals Journal of Chemical Information and Modeling 61 2021 pubs.acs.org/jcim 10.1021/acs.jcim.0c01286

5. Hydration Thermodynamics of Familial Parkinson’s Disease Linked Mutants of α-Synuclein. Research Papers in Peer Reviewed Journals Journal of Chemical Information and Modeling 1549-9596 61 2021 pubs.acs.org/jcim 10.1021/acs.jcim.1c00034

6. Effect of Ligand Binding on Riboswitch Folding: Theory and Simulations. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 154 2021 aip.scitation.org/ https://doi.org/10.1063/5.0047684

7. Intramolecular Relaxation of Ring Polymers in Dilute Solutions, Research Papers in Peer Reviewed Journals Journal of Rheology 0148-6055 65 2021 sor.scitation.org/doi/pdf/10.1122/8.0000153 10.1122/8.0000153

8. Conformational Transitions of Amyloid-ꞵ: A Langevin and Generalized Langevin Dynamics Simulation Study. Research Papers in Peer Reviewed Journals ACS Omega 2470-1343 6 2021 http://pubs.acs.org/journal/acsodf 10.1021/acsomega.1c00516

9. Conformations of Ring Polymers with Excluded Volume Interactions. Research Papers in Peer Reviewed Journals Journal of Rheology 0148-6055 65 2021 sor.scitation.org/doi/pdf/10.1122/8.0000254 10.1122/8.0000254

10. A Generalized Langevin Equation Approach for Barrier Crossing Dynamics in Conformational Transitions of Proteins. Research Papers in Peer Reviewed Journals Journal of Statistical Mechanics: Theory and Experiment 1742-5468 2021 2021 iopscience.iop.org 10.1088/1742-5468/ac08fd

15. Interaction Volume is a Measure of Aggregation Propensity of Amyloid-ꞵ, Research Papers in Peer Reviewed Journals Journal of Physical Chemistry Letters 1948-7185 11 2020 pubs.acs.org/JPCL 10.1021/acs.jpclett.0c00922

16. Conformational Properties of Complexes of Poly (propylene imine) Dendrimers with Linear Polyelectrolytes in Dilute Solutions. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 153 2020 aip.scitation.org/ 10.1063/5.0030270

11. Conformational Transitions of a DNA Hairpin through Transition Path Times. Research Papers in Peer Reviewed Journals Journal of Statistical Mechanics: Theory and Experiment 1742-5468 2020 2020 iopscience.iop.org/ 10.1088/1742-5468/aba0a7

12. Conformational Properties of Poly (propylene imine) Dendrimers in an Ionic Liquid at Different pH. Research Papers in Peer Reviewed Journals Soft Matter 1744-683X 16 2020 10.1039/D0SM01026J

13. Orientational Relaxation of Poly (propylene imine) Dendrimers at Different pH. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 124 2020 pubs.acs.org/JPCB 10.1021/acs.jpcb.0c00536

14. Effect of Alzheimer’s Disease Causative and Protective Mutations on the Hydration Environment of Amyloid-ꞵ. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 124 2020 pubs.acs.org/JPCB 10.1021/acs.jpcb.9b10425

17. Orientational Relaxation of Ring Polymers in Dilute Solutions. Research Papers in Peer Reviewed Journals Soft Matter 1744-683X 15 2019 rsc-li/soft-matter-journal 10.1039/C9SM00640K

18. Effect of Correlated Pair Mutations in Protein Misfolding. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 123 2019 pubs.acs.org/JPCB 10.1021/acs.jpcb.9b03533

19. Theory for the Dynamics of Polymer Grafted Nanoparticle in Solution. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry C 1932-7455 123 2019 pubs.acs.org/JPCC 10.1021/acs.jpcc.9b08241

20. Unusual Dynamics of Hydration Water Around Motor Proteins with Long-ranged Hydrodynamic Fluctuations. Research Papers in Peer Reviewed Journals Physica A 0378-4371 532 2019 www.elsevier.com/locate/physa 10.1016/j.physa.2019.122045

21. Effect of Site-directed Point Mutations on Protein Misfolding; A Simulation Study. Research Papers in Peer Reviewed Journals Proteins: Structure, Function and Bioinformatics 10970134 87 2019 wileyonlinelibrary.com/journal/prot 10.1002/prot.25702

22. Hydration Water Distribution Around Intrinsically Disordered Proteins. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 122 2018 pubs.acs.org/JPCB 10.1021/acs.jpcb.7b11091

23. Effect of pH on Size and Internal Structure of Poly (propylene imine) Dendrimers: A Molecular Dynamics Simulation Study. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 122 2018 pubs.acs.org/JPCB 10.1021/acs.jpcb.8b04653

24. Salt-bridge Dynamics in Intrinsically Disordered Proteins: A Trade-off Between Electrostatic Interactions and Structural Flexibility. Research Papers in Peer Reviewed Journals Biochimica Biophysica Acta, Proteins and Proteomics 1570-9639 1866 2018 www.elsevier.com/locate/bbapap 10.1016/j.bbapap.2018.03.002

25. Estimating the Mean First Passage Time of Protein Misfolding. Research Papers in Peer Reviewed Journals Physical Chemistry Chemical Physics 1463-9076 20 2018 rsc-li/pccp 10.1039/C7CP06918A

26. Hydration Water Dynamics Around a Protein Surface: A First Passage Time Approach. Research Papers in Peer Reviewed Journals Journal of Physics: Condensed Matter 0953-8984 30 2018 iopscience.iop.org/journal 10.1088/1361-648X/aa9eab

27. Topology Driven Structural Transition of Dendrimers with a Dimensional Cross-over. Research Papers in Peer Reviewed Journals Polymer 0032-3861 115 2017 www.elsevier.com/locate/polymer 10.1016/j.polymer.2017.03.013

28. Role of Local and Nonlocal Interactions in Folding and Misfolding of Globular Proteins. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 146 2017 aip.scitation.org/ 10.1063/1.4975325

29. Globular-Disorder Transition in Proteins: A Compromise Between Hydrophobic and Electrostatic Interactions? Research Papers in Peer Reviewed Journals Physical Chemistry Chemical Physics 1463-9076 18 2016 www.rsc.org/pccp 10.1039/C6CP03185D

30. Dynamics of Dendrimers with Excluded Volume: A Comparison with Experiments and Simulations. Research Papers in Peer Reviewed Journals Journal of Rheology 0148-6055 60 2016 https://sor.scitation.org/ 10.1122/1.4937378

31. Diffusion of Hydration Water Around Intrinsically Disordered Proteins. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 119 2015 pubs.acs.org/JPCB 10.1021/acs.jpcb.5b07248

32. Conformational Entropy of Intrinsically Disordered Proteins from Amino Acid Triads. Research Papers in Peer Reviewed Journals Scientific Reports 2045-2322 5 2015 www.nature.com/scientificreports 10.1038/srep11740

33. Designing pH Induced Fold Switch in Proteins. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 142 2015 aip.scitation.org/ 10.1063/1.4920938

34. Effect of Excluded Volume on the Rheology and Transport Dynamics of Randomly Hyperbranched Polymers. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 142 2015 aip.scitation.org/ 10.1063/1.4919643

35. Local Structure and Dynamics of Hydration Water in Intrinsically Disordered Proteins. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 119 2015 pubs.acs.org/JPCB 10.1021/jp511961c

36. Intramolecular Relaxation of Flexible Dendrimers with Excluded Volume. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 141 2014 aip.scitation.org/ 10.1063/1.4890078

37. Does Lack of Secondary Structure Imply Intrinsic Disorder in Proteins? A Sequence Analysis. Research Papers in Peer Reviewed Journals Biochimica Biophysica Acta, Proteins and Proteomics 1570-9639 1844 2014 www.elsevier.com/locate/bbapap 10.1016/j.bbapap.2014.07.020

38. Shape Dependence of the Radial Distribution Function of Hydration Water Around Proteins. Research Papers in Peer Reviewed Journals Journal of Physics, Condensed Matter 0953-8984 26 2014 iopscience.iop.org/ 10.1088/0953-8984/26/33/335102

39. The Role of Site-directed Point Mutations in Protein Misfolding. Research Papers in Peer Reviewed Journals Physical Chemistry Chemical Physics 1463-9076 16 2014 www.rsc.org/pccp 10.1039/C3CP55367A

40. Hydrogen Bond Dynamics in Intrinsically Disordered Proteins. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 118 2014 pubs.acs.org/JPCB 10.1021/jp5013544

41. Designing Sequences with Varied Flexibility and Stability through Pair Mutations. Research Papers in Peer Reviewed Journals RSC Advances 2046-2069 4 2014 www.rsc.org/advances 10.1039/C3RA46247A

42. Orientational Relaxation in Semiflexible Dendrimers. Research Papers in Peer Reviewed Journals Physical Chemistry Chemical Physics 1463-9076 15 2013 www.rsc.org/pccp 10.1039/C3CP53864H

43. Helical Ambivalency Induced by Point Mutations. Research Papers in Peer Reviewed Journals BMC Structural Biology 1472-6807 13 2013 http://www.biomedcentral.com/ 10.1186/1472-6807-13-9

44. Conformational and Intramolecular Relaxation Dynamics of Semiflexible Randomly Hyperbranched Polymers. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 138 2013 aip.scitation.org/ 10.1063/1.4794310

45. Capturing Molten Globule State of α-Lactalbumin through Constant pH Molecular Dynamics Simulations. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 138 2013 aip.scitation.org/ 10.1063/1.4793470

46 Semiflexibility Induced Range of Conformations in Dendrimers. Research Papers in Peer Reviewed Journals Soft Matter 1744-683X 9 2013 www.rsc.org/softmatter 10.1039/C2SM27630E

47. Sulfur-containing Angiotensin-converting Enzyme Inhibitor 3-thienylalanine-orinthyl-proline Activates Endothelial Function and Expression of Genes Involved in Rennin-Angiotensin System. Research Papers in Peer Reviewed Journals Journal of Cardiovascular Pharmacology 1533-4023 61 2013 www.jcvp.org/ 10.1097/FJC.0b013e318280e16e

48. Conformational Transitions in Semiflexible Dendrimers Induced by Bond Orientations. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 137 2012 aip.scitation.org/ 10.1063/1.4754871

49. Hydrophobic Moments, Shape, and Packing in Disordered Proteins. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 116 2012 pubs.acs.org/JPCB 10.1021/jp3016529

50. Role of Conformational Heterogeneity on Protein Misfolding. Research Papers in Peer Reviewed Journals Soft Matter 1744-683X 8 2012 www.rsc.org/softmatter 10.1039/C2SM06608D

51. Are Ambivalent -Helices Entropically Driven? Research Papers in Peer Reviewed Journals Protein Engineering Design and Selection 1741-0126 25 2012 https://academic.oup.org/peds 10.1093/protein/gzr059

52. Local Order and Mobility of Water Molecules Around Ambivalent Helices. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 115 2011 pubs.acs.org/JPCB 10.1021/jp2066106

54. Structure of Hydration Water in Proteins: A Comparison of Molecular Dynamics Simulation and Database Analysis. Research Papers in Peer Reviewed Journals Biophysical Chemistry 0301-4622 158 2011 www.elsevier.com/locate/biophyschem 10.1016/j.bpc.2011.05.009

54.Intramolecular Relaxation Dynamics of Semiflexible Dendrimers. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 134 2011 aip.scitation.org/ 10.1063/1.3598336

55. Shape, Flexibility and Packing of Proteins and Nucleic Acids in Complexes. Research Papers in Peer Reviewed Journals Physical Chemistry Chemical Physics 1463-9076 13 2011 www.rsc.org/pccp 10.1039/C1CP00027F

56. Role of Foldability and Stability in Designing Real Proteins Sequences. Research Papers in Peer Reviewed Journals Physical Chemistry Chemical Physics 1463-9076 13 2011 www.rsc.org/pccp 10.1039/C0CP02973D

57. Designing Misfolded Proteins by Energy Landscaping. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 115 2011 pubs.acs.org/JPCB 10.1021/jp108416c

58. Statistical Analysis and Molecular Dynamics Simulations of Ambivalent -Helices. Research Papers in Peer Reviewed Journals BMC Bioinformatics 1471-2105 11 2010 http://www.biomedcentral.com/ 10.1186/1471-2105-11-519

59. Position-specific Propensities of Amino Acids in the beta-Strand. Research Papers in Peer Reviewed Journals BMC Structural Biology 1472-6807 10 2010 http://www.biomedcentral.com/ 10.1186/1472-6807-10-29

60. Dynamics of Semiflexible Dendrimers in Dilute Solutions. Research Papers in Peer Reviewed Journals Macromolecules 0024-9297 43 2010 pubs.acs.org/Macromolecules 10.1021/ma101142z

61. Neutrality and Evolvability Designed Protein Sequences. Research Papers in Peer Reviewed Journals Physical Review E 2470-0045 82 2010 https://link.aps.org/ 10.1103/PhysRevE.82.011906

62. Size, Shape and Flexibility of Proteins and DNA Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 131 2009 aip.scitation.org/ 10.1063/1.3251769

63. Combinatorial Design of Protein Sequences with Applications to Lattice and Real Proteins. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 131 2009 aip.scitation.org/ 10.1063/1.3236519

64.Structural Patterns in α-Helices and -Sheets in Globular Proteins. Research Papers in Peer Reviewed Journals Protein and Peptide Letters 0929-8665 16 2009 www.eurekeselect.com/ 10.2174/092986609788923239

65. Statistical Theory of Neutral Protein Evolution by Random Site Mutations. Research Papers in Peer Reviewed Journals Journal of Chemcal Sciences 09743626 121 2009 https://www.ias.ac.in/ https://www.ias.ac.in/article/fulltext/jcsc/121/05/0887-0896

66. Statistical Theory of Protein Sequence Design by Random Mutation. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 113 2009 pubs.acs.org/JPCB 10.1021/jp810515s

67. Effect of Varying Chain Length Between P1 and P1' Position of Tripeptidomimics on Activity of Angiotensin-converting Enzyme Inhibitors. Research Papers in Peer Reviewed Journals Bioorganic and Medicinal Chemistry Letters 0960-894X 19 2009 www.elsevier.com/locate/bmcl 10.1016/j.bmcl.2009.05.079

68. Effect of 3-thienylalamine-ornithine-proline, New Sulfur-containing Angiotesin-converting Enzyme Inhibitor on Blood Pressure and Oxidative Stress in Spontaneously Hypertensive Rats. Research Papers in Peer Reviewed Journals Journal of Cardiovascular Pharmacology 1533-4023 53 2009 www.jcvp.org/ 10.1097/FJC.0b013e318197c616

69. Structural Analysis Protein Variants of Factor IX Protein Variants to Predict Functional Aberration Haemophilia B. Research Papers in Peer Reviewed Journals Haemophilia 13518216 14 2008 https://onlinelibrary.wiley.com/journal 10.1111/j.1365-2516.2008.01788.x

70. Multiple Substitution at Single Site: Interpreting the Effect of Asn92 Mutations in Human Coagulation Factor IX. Research Papers in Peer Reviewed Journals Haemophilia 13518216 14 2008 https://onlinelibrary.wiley.com/journal 10.1111/j.1365-2516.2007.01637.x

71. BioSuite: A Comprehensive Bioinformatics Software Package (a unique industry-academia collaboration). Research Papers in Peer Reviewed Journals Current Science 0011-3891 92 2007 http://www.ias.ac.in/currsci/jan102007/29.pdf No DOI available

72. Statistical Theory for Protein Ensembles with Designed Energy Landscapes. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 123 2005 aip.scitation.org/ 10.1063/1.2062047

73. Stretch Dynamics of Flexible Dendritic Polymers in Solution. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 114 2001 aip.scitation.org/ 10.1063/1.1334660

74. Polymer Dynamics and Topology: Extension of Stars and Dendrimers in External Fields. Research Papers in Peer Reviewed Journals Macromolecular Theory and Simulations 1022-1344 9 2000 https://onlinelibrary.wiley.com/journal 10.1002/(SICI)1521-3919(20000101)9:1<56::AID-MATS56>3.0.CO;2-N

75. Hydrodynamic Effects on the Extension of Stars and Dendrimers in External Fields. Research Papers in Peer Reviewed Journals Macromolecular Theory and Simulations 1022-1344 9 2000 https://onlinelibrary.wiley.com/journal 10.1002/1521-3919(20001101)9:8<608::AID-MATS608>3.0.CO;2-2

76. Dynamics of Entangled H-polymers: Theory, Rheology, and Neutron-Scattering. Research Papers in Peer Reviewed Journals Macromolecules 0024-9297 32 1999 pubs.acs.org/Macromolecules 10.1021/ma990323j

77. Shape of Generalized Random Walks. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 104 1996 aip.scitation.org/ 10.1063/1.471039

78. Polymers Below the Theta Point: Renormalization Group Considerations. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 103 1995 aip.scitation.org/ 10.1063/1.470273

79. Dynamics of Fractional Brownian Walks. Research Papers in Peer Reviewed Journals Journal of Physical Chemistry B 1520-6106 99 1995 pubs.acs.org/JPC 10.1021/j100002a052

80. Radial Dimensions of Starburst Polymers. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 100 1994 aip.scitation.org/ 10.1063/1.467247

81. Chain Dimensions near the Critical Point. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 100 1994 aip.scitation.org/ 10.1063/1.466249

82. Path Integral Description of Polymers using Fractional Brownian Walks. Research Papers in Peer Reviewed Journals Journal of Chemical Physics 0021-9606 99 1993 aip.scitation.org/ 10.1063/1.465539

Publications other than journal articles
Title of Publication Type of Publication Publisher Role in Publication ISBN Number Year URL Level
1. Theoretical and Computational Advances in Protein Misfolding Chapters in Books Elsevier Author 1876-1623 2019 International
Honour And Awards
Name of the Award Name of the Awarding Body Award Category Level Date of Award
Prof. S. K. Chatterjee Award Indian Institute of Science, Bangalore Research National 2016-09-11
Charusita Chakravarty Memorial Lecture Award Chemical Research Society of India Research National 2017-02-03
Seminar / Conference Details / Workshops
Title of the Activity Attended As Date
Hydration Pattern and Thermodynamics of Amyloid-β and its mutants Invited Talk 2022-03-02
Barrier Crossing Dynamics in Conformational Transitions of Biomolecules Invited Talk 2021-12-11
Measuring the Aggregation Propensity of Intrinsically Disordered Proteins Invited Talk 2021-10-27
Conformation and Rheology of Ring Polymers in Dilute Solutions Invited Talk 2021-09-04
Measuring the Aggregation Propensity of Amyloid-β and its FAD Mutants Invited Talk 2021-01-23
Structural Transitions in Dendrimers Induced by Semiflexibility? Excluded Volume and pH Invited Talk 2020-02-23
Hydration Pattern of Intrinsically Disordered Proteins Invited Talk 2019-10-03
Stochastic Dynamics of Conformational Transitions of Biomolecules: Theory and Simulations. Invited Talk 2022-09-22
Protein Misfolding: A Generalized Approach. Invited Talk 2019-08-23
Hydration Pattern of Intrinsically Disordered Proteins. Invited Talk 2019-03-08
How do Proteins Misfold? Simple Models to Real Proteins. Invited Talk 2019-02-20
* This site is designed and developed by Samarth eGov and the content is provided by the individual. For further details, please contact the individual / university.