|
Research Publications
|
| Title of Article |
Type of Publication |
Name of Journal |
ISSN |
Journal Volume |
Year |
Link to Article |
DOI (Digital Object Identifier) |
|
Nucleoside and non-nucleoside reverse transcriptase inhibitor drugs (NRTIs and NNRTIs) are capable of binding Chandipura virus polymerase protein (L) and inhibit virus replication.
|
Research Papers in Web of Science Listed Journals
|
VirusDisease
|
2347-3517
|
|
2024 |
https://link.springer.com/article/10.1007/s13337-024-00883-w |
10.1007/s13337-024-00883-w
|
|
Transcriptome responses of Arabidopsis to necrotrophic fungus Alternaria brassicae reveal pathways and candidate genes associated with resistance.
|
Research Papers in Web of Science Listed Journals
|
Plant Molecular BIology
|
1573-5028
|
|
2024 |
https://link.springer.com/article/10.1007/s11103-024-01453-w |
10.1007/s11103-024-01453-w
|
|
The potential of R. Toruloides mevalonate pathway genes in increasing isoprenoid yields in S. Cerevisiae: Evaluation of GGPPS and HMG-coa reductase
|
Research Papers in Web of Science Listed Journals
|
Enzyme and Microbial Technology
|
1879-0909
|
|
2023 |
https://www.sciencedirect.com/science/article/abs/pii/S0141022923001825?via%3Dihub |
10.1016/j.enzmictec.2023.110374
|
|
AFRbase: A database of protein mutations responsible for antifungal resistance
|
Research Papers in Web of Science Listed Journals
|
Bioinformatics
|
|
|
2023 |
https://academic.oup.com/bioinformatics/article/39/11/btad677/7382209?login=false |
10.1093/bioinformatics/btad677
|
|
Genomic analysis of phylogroup D Escherichia coli strains using novel de-novo reference-based guided assembly
|
Research Papers in Web of Science Listed Journals
|
Scientific Data
|
2052-4463
|
|
2023 |
https://www.nature.com/articles/s41597-023-02444-0 |
10.1038/s41597-023-02444-0
|
|
Comprehensive genomic analysis of hypocholesterolemic probiotic Enterococcus faecium LR13 reveals unique proteins involved in cholesterol-assimilation
|
Research Papers in Web of Science Listed Journals
|
Frontiers in Microbiology
|
|
|
2023 |
https://www.frontiersin.org/journals/nutrition/articles/10.3389/fnut.2023.1082566/full |
10.3389/fnut.2023.1082566
|
|
ProSeqAProDB: Prosequence assisted protein Database.
|
Research Papers in Web of Science Listed Journals
|
Journal of Molecular Biology
|
|
|
2023 |
https://www.sciencedirect.com/science/article/abs/pii/S0022283623000785 |
10.1016/j.jmb.2023.168022
|
|
β-LacFamPred: An online tool for prediction and classification of β-lactamase class, subclass, and family.
|
Research Papers in Web of Science Listed Journals
|
Frontiers in Microbiology
|
1664-302X
|
|
2023 |
https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2022.1039687/full |
10.3389/fmicb.2022.1039687
|
|
BacARscan: an in-silico resource to discern diversity in antibiotic resistance genes.
|
Research Papers in Web of Science Listed Journals
|
Biology Methods & Protocols.
|
2396-8923
|
|
2022 |
https://academic.oup.com/biomethods/article/7/1/bpac031/6854969 |
10.1093/biomethods/bpac031
|
|
Designing dual inhibitors against potential drug targets of Plasmodium falciparum -M17 Leucyl Aminopeptidase and Plasmepsins
|
Research Papers in Web of Science Listed Journals
|
Journal of Biomolecular Structure and Dynamics
|
|
|
2022 |
https://www.tandfonline.com/doi/abs/10.1080/07391102.2022.2129452 |
10.1080/07391102.2022.2129452
|
|
Protein expression profiling, in silico classification and pathway analysis of cariogenic bacteria Streptococcus mutans under bacitracin stress conditions.
|
Research Papers in Web of Science Listed Journals
|
Journal of Medical Microbiology
|
|
|
2022 |
https://www.microbiologyresearch.org/content/journal/jmm/10.1099/jmm.0.001572 |
10.1099/jmm.0.001572
|
|
Insights into the human gut virome by sampling a population from the Indian subcontinent.
|
Research Papers in Web of Science Listed Journals
|
Journal of General Virology
|
1465-2099
|
|
2022 |
https://www.microbiologyresearch.org/content/journal/jgv/10.1099/jgv.0.001774#tab2 |
10.1099/jgv.0.001774
|
|
Heterologous expression of novel SUMO proteases from Schizosaccharomyces pombe in E. coli: Catalytic domain identification and optimization of product yields. International.
|
Research Papers in Web of Science Listed Journals
|
Journal of Biological Macromolecules
|
|
|
2022 |
https://www.sciencedirect.com/science/article/abs/pii/S0141813022007863?via%3Dihub |
10.1016/j.ijbiomac.2022.04.078
|
|
Investigating the disordered regions (MoRFs, SLiMs and LCRs) and functions of mimicry proteins/peptides in silico. PloS One
|
Research Papers in Web of Science Listed Journals
|
PLOS ONE
|
1932-6203
|
|
2022 |
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0265657 |
10.1371/journal.pone.0265657
|
|
Proteome profiling of carbapenem-resistant K. pneumoniae clinical isolate (NDM-4): Exploring the mechanism of resistance and potential drug targets
|
Research Papers in Peer Reviewed Journals
|
J Proteomics
|
1874-3919
|
200 |
|
|
10.1016/j.jprot.2019.04.003
|
|
Public health implications of plasmid-mediated quinolone and aminoglycoside resistance genes in Escherichia coli inhabiting a major anthropogenic river of India
|
Research Papers in Web of Science Listed Journals
|
Epidemiology & Infection
|
1469-4409
|
|
2022 |
https://www.cambridge.org/core/journals/epidemiology-and-infection/article/public-health-implications-of-plasmidmediated-quinolone-and-aminoglycoside-resistance-genes-in-escherichia-coli-inhabiting-a-major-anthropogenic-river-of-india/D92A82CC71595A9A179CC7D724FF0E50#metrics |
10.1017/S095026882200053X
|
|
Proteomic Analysis of the Colistin-resistant E. coli Clinical Isolate: Explorations of the Resistome.
|
Research Papers in Web of Science Listed Journals
|
Protein & Peptide Letters
|
1875-5305
|
|
2022 |
https://www.eurekaselect.com/article/119104 |
10.2174/0929866528666211129095001
|
|
Investigating the OXA variants of ESKAPE pathogens.
|
Research Papers in Web of Science Listed Journals
|
Antibiotics
|
2079-6382
|
|
2021 |
https://www.mdpi.com/2079-6382/10/12/1539 |
10.3390/antibiotics10121539
|
|
Efficacy of signal peptide predictors in identifying signal peptides in the experimental secretome of Picrophilous torridus, a thermoacidophilic archaeon.
|
Research Papers in Web of Science Listed Journals
|
PLOS ONE
|
1932-6203
|
|
2021 |
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0255826 |
10.1371/journal.pone.0255826
|
|
Rhizospheric Lactobacillus plantarum (Lactiplantibacillus plantarum) exhibit bile salt hydrolysis, hypocholestrolemic and probiotic capabilities.
|
Research Papers in Web of Science Listed Journals
|
Scientific Reports
|
2045-2322
|
|
2021 |
https://www.nature.com/articles/s41598-021-94776-3 |
10.1038/s41598-021-94776-3
|
|
Exploring the genetic mechanisms underlying amoxicillin-clavulanate resistance in waterborne Escherichia coli
|
Research Papers in Peer Reviewed Journals
|
Infection Genetics & Evolution
|
15677257, 15671348
|
90 |
|
|
10.1016/j.meegid.2021.104767
|
|
Discerning novel drug targets for treating Mycobacterium avium ss. paratuberculosis associated autoimmune disorders: an in silico approach
|
Research Papers in Peer Reviewed Journals
|
Briefings in Bioinformatics
|
1477-4054
|
22 |
|
|
10.1093/bib/bbaa195
|
|
In-silico Design of a Multivalent Epitope-Based Vaccine against Candida auris
|
Research Papers in Peer Reviewed Journals
|
Microbial Pathogenesis
|
0882-4010
|
155 |
|
|
10.1016/j.micpath.2021.104879
|
|
High Prevalence of Drug Resistance and Class 1 Integrons in Escherichia coli Isolated From River Yamuna, India A Serious Public Health Risk
|
Research Papers in Peer Reviewed Journals
|
Frontiers in Microbiology
|
1664302X
|
56 |
|
|
10.3389/fmicb.2021.621564
|
|
Exploring the genetic mechanisms underlying amoxicillin-clavulanate resistance in waterborne Escherichia coli.
|
Research Papers in Web of Science Listed Journals
|
Infection Genetics & Evolution
|
567-7257
|
90 |
2021 |
https://www.sciencedirect.com/science/article/abs/pii/S1567134821000642 |
10.1016/j.meegid.2021.104767
|
|
Comparative Proteomics of Commensal and Pathogenic Strains of Escherichia coli
|
Research Papers in Peer Reviewed Journals
|
Protein and Peptide Letters
|
1875-5305
|
27 |
|
|
10.2174/0929866527666200517104154
|
|
Identification of binding partners of CsaA - an archaeal chaperonic pro-tein of Picrophilus torridus
|
Research Papers in Peer Reviewed Journals
|
Protein and Peptide Letters
|
09298665, 18755305
|
28 |
|
|
10.2174/0929866527999201126205131
|
|
Exploring the genetic determinants underlying the differential production of an inducible chromosomal cephalosporinase - BlaB in Yersinia enterocolitica biotypes 1A, 1B, 2 and 4
|
Research Papers in Peer Reviewed Journals
|
Scientific Reports
|
2045-2322
|
NA |
|
|
10.1038/s41598-020- 67174-4
|
|
BacEffluxPred: A two-tier system to predict and categorize bacterial efflux mediated antibiotic resistance proteins
|
Research Papers in Peer Reviewed Journals
|
Scientific Reports
|
2045-2322
|
NA |
|
|
10.1038/s41598-020-65981-3
|
|
Biophysical and biochemical characterization of nascent polypeptide associated complex of Picrophilus torridus and elucidation of its interacting partners
|
Research Papers in Peer Reviewed Journals
|
Frontiers in Microbiology
|
1664302X
|
NA |
|
|
10.3389/fmicb.2020.00915
|
|
mRNALoc: a novel machine-learning-based in-silico tool to predict mRNA subcellular localization
|
Research Papers in Peer Reviewed Journals
|
Nucleic Acids Research
|
NA
|
48 |
|
|
10.1093/nar/gkaa385
|
|
Comparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis
|
Research Papers in Peer Reviewed Journals
|
Scientific Reports
|
2045-2322
|
NA |
|
|
10.1038/s41598-020-59924-1
|
|
Down-Regulation of Flagellar, Fimbriae, and Pili Proteins in Carbapenem-Resistant Klebsiella pneumoniae (NDM-4) Clinical Isolates: A Novel Linkage to
Drug Resistance
|
Research Papers in Peer Reviewed Journals
|
Frontiers in Microbiology
|
1664302X
|
1664302X |
|
|
10.3389/fmicb.2019.02865
|
|
Identifying residues that determine palmitoylation using association rule mining
|
Research Papers in Peer Reviewed Journals
|
Bioinformatics
|
1367-4803
|
35 |
|
|
10.1093/bioinformatics/btz003
|
|
Molecular Characteristics of “BlaB-like” Chromosomal Inducible Cephalosporinase of Yersinia enterocolitica Biotype 1A Strains
|
Research Papers in Peer Reviewed Journals
|
Microbial Drug Resistance
|
1931-8448
|
25 |
|
|
10.1089/mdr.2018.0282
|
|
Evaluation of bile salt hydrolases, cholesterol-lowering capabilities, and probiotic potential of Enterococcus faecium isolated from rhizosphere
|
Research Papers in Peer Reviewed Journals
|
Frontiers in Microbiology
|
1664302X
|
NA |
|
|
10.3389/fmicb.2019.01567
|
|
Molecular analysis of ampR and ampD to understand variability in inducible expression of “BlaB-like” cephalosporinase in Yersinia enterocolitica biotype 1A
|
Research Papers in Peer Reviewed Journals
|
Gene
|
NA
|
704 |
|
|
10.1016/j.gene.2019.04.031
|
|
Antimicrobial resistance and its relationship with biofilm production and virulence-related factors in Yersinia enterocolitica biotype 1A
|
Research Papers in Peer Reviewed Journals
|
Heliyon
|
NA
|
5 |
|
|
10.1016/j.heliyon.2019.e01777
|
|
ampD homologs in biotypes of Yersinia enterocolitica: Implications in regulation of chromosomal AmpC-type cephalosporinases
|
Research Papers in Peer Reviewed Journals
|
Infection, Genetics and Evolution
|
1567-1348, 1567-7257
|
69 |
|
|
10.1016/j.meegid.2019.01.033
|
|
predicting and classifying betalactamase using a 3-tier prediction system via Chou's general PseAAC
|
Research Papers in Peer Reviewed Journals
|
Journal of Theoretical Biology
|
0022-5193
|
457 |
|
|
10.1016/j.jtbi.2018.08.030
|
|
Comparative functional analysis of proteins containing low-complexity predicted amyloid regions
|
Research Papers in Peer Reviewed Journals
|
PeerJ
|
2689-7733
|
35 |
|
|
10.1093/bioinformatics/btz003
|
|
Using molecular-mimicry-inducing pathways of pathogens as novel drug targets
|
Research Papers in Peer Reviewed Journals
|
Drug Discovery Today
|
1359-6446
|
24 |
|
|
10.1016/j.drudis.2018.10.010
|
|
Prediction of rare palmitoylation events in proteins
|
Research Papers in Peer Reviewed Journals
|
Journal of Computational Biology
|
0303-6812, 1432-1416
|
25 |
|
|
10.1089/cmb.2017.0069
|
|
HSP70 in Human Diseases and Disorders
|
Research Papers in Peer Reviewed Journals
|
Springer
|
1877-1246, 978-3-319-89551-2
|
14 |
|
|
https://doi.org/10.1007/978-3-319-89551-2
|
|
Prediction of zinc binding sites in proteins using sequence derived information
|
Research Papers in Peer Reviewed Journals
|
Journal of Bimolecular Structure & Dynamics
|
4413-4423
|
36 |
|
|
10.1080/07391102.2017.1417910
|
|
miPepBase: A database of experimentally verified peptides involved in molecular mimicry
|
Research Papers in Peer Reviewed Journals
|
Frontiers in Microbiology, section Microbial Immunology
|
1664-302X
|
8 |
|
|
https://doi.org/10.3389/fmicb.2017.02053
|
|
Proteome-wide prediction and annotation of mitochondrial and sub-mitochondrial proteins by incorporating domain information
|
Research Papers in Peer Reviewed Journals
|
Mitochondrion
|
15677249
|
42 |
|
|
10.1016/j.mito.2017.10.004
|
|
Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine
|
Research Papers in Peer Reviewed Journals
|
Peer J
|
2689-7733
|
NA |
|
|
10.7717/peerj.3561
|
|
MALDI-TOF MS in clinical parasitology: applications, constraints, and prospects
|
Research Papers in Peer Reviewed Journals
|
Parasitology
|
0031-1820, 1469-8161
|
143 |
|
|
10.1017/S0031182016001189
|
|
PredHSP: Sequence Based Proteome-Wide Heat Shock Protein Prediction and Classification Tool to Unlock the Stress Biology
|
Research Papers in Peer Reviewed Journals
|
PLoS One
|
1932-6203
|
NA |
|
|
10.1371/journal.pone.0155872
|
|
CrAgDb – A database of annotated chaperone repertoire in archaeal genomes
|
Research Papers in Peer Reviewed Journals
|
FEMS Microbiology Letters
|
0378-1097, 1574-6968
|
363 |
|
|
10.1093/femsle/fnw030
|
|
Resistance to amoxicillin-clavulanate and its relation to virulence-related factors in Yersinia enterocolitica biovar 1A
|
Research Papers in Peer Reviewed Journals
|
Indian Journal of Medical Microbiology
|
0255-0857-1998-3646
|
34 |
|
|
10.4103/0255-0857.174125
|
|
MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis
|
Research Papers in Peer Reviewed Journals
|
Frontiers in Microbiology
|
1664302X
|
6 |
|
|
10.3389/fmicb.2015.00791
|
|
Structural Variabilities in β-Lactamase (blaA) of Different Biovars of Yersinia enterocolitica: Implications for β-Lactam Antibiotic and β-Lactamase Inhibitor Susceptibilities
|
Research Papers in Peer Reviewed Journals
|
PLOS One
|
1932-6203
|
|
|
|
10.1371/journal.pone.0123564
|
|
Low complexity and disordered regions of proteins have different structural and amino acid preferences
|
Research Papers in Peer Reviewed Journals
|
Molecular Biosystems
|
1742-206X, 1742-2051
|
11 |
|
|
10.1039/c4mb00425f
|
|
Prediction of β-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
|
Research Papers in Peer Reviewed Journals
|
Journal of Theoretical Biology
|
0022-5193
|
365 |
|
|
10.1016/j.jtbi.2014.10.008
|
|
CBMAR: a comprehensive β-lactamase molecular annotation resource
|
Research Papers in Peer Reviewed Journals
|
Database
|
1758-0463
|
2014 |
|
|
10.1093/database/bau111
|
|
NRfamPred: a proteome-scale two level method for prediction of nuclear receptor proteins and their sub-families
|
Research Papers in Peer Reviewed Journals
|
Scientific Reports
|
2045-2322
|
|
|
|
10.1038/srep06810
|
|
Molecular analysis of β-lactamase genes to understand their differential expression in strains of Yersinia enterocolitica biotype 1A
|
Research Papers in Peer Reviewed Journals
|
Scientific Reports
|
2045-2322
|
|
|
|
10.1038/srep05270
|
|
Protein sub-nuclear localization prediction using SVM and Pfam domain information
|
Research Papers in Peer Reviewed Journals
|
PLOS One
|
1932-6203
|
9 |
|
|
10.1371/journal.pone.0098345
|
|
PalmPred: an SVM based palmitoylation prediction method using sequence profile information
|
Research Papers in Peer Reviewed Journals
|
PLOS One
|
1932-6203
|
9 |
|
|
10.1371/journal.pone.0089246
|
|
Identification of family specific fingerprints in β-lactamase families
|
Research Papers in Peer Reviewed Journals
|
The Scientific World Journal
|
2356-6140, 1537-744X
|
2014 |
|
|
10.1155/2014/980572
|
|
Analysis of intracellular expressed proteins of Mycobacterium tuberculosis clinical isolates
|
Research Papers in Peer Reviewed Journals
|
Proteome Science
|
1477-5956
|
|
|
|
10.1186/1477-5956-10-14
|
|
PrionHome: a database of prions and other sequences relevant to prion phenomena
|
Research Papers in Peer Reviewed Journals
|
PLOS One
|
1932-6203
|
7 |
|
|
10.1371/journal.pone.0031785
|
|
SVM based prediction of RNA-binding proteins using binding residues and evolutionary information
|
Research Papers in Peer Reviewed Journals
|
Journal of Molecular Recognition
|
0952-3499, 1099-1352
|
|
|
|
10.1002/jmr.1061
|
|
LPS-annotate: complete annotation of compositionally biased regions in the protein knowledgebase
|
Research Papers in Peer Reviewed Journals
|
Database (Oxford)
|
1758-0463
|
2011 |
|
|
10.1093/database/baq031
|
|
Genomic assessment of the evolution of the prion protein gene family in vertebrates
|
Research Papers in Peer Reviewed Journals
|
Genomics
|
0888-7543, 1089-8646
|
95 |
|
|
10.1016/j.ygeno.2010.02.008
|
|
Hmrbase: a database of hormones and their receptors
|
Research Papers in Peer Reviewed Journals
|
BMC Genomics
|
1471-2164
|
|
|
|
10.1186/1471-2164-10-307
|
|
OxDBase: a database of oxygenases involved in biodegradation
|
Research Papers in Peer Reviewed Journals
|
BMC Research Notes
|
|
|
|
|
10.1186/1756-0500-2-67
|
|
Prediction of polyadenylation signals in human DNA sequences using nucleotide frequencies
|
Research Papers in Peer Reviewed Journals
|
In Silico Biology
|
13866338, 14343207
|
9 |
|
|
10.3233/ISB-2009-0395
|
|
Prediction of nuclear proteins using SVM and HMM models
|
Research Papers in Peer Reviewed Journals
|
BMC Bioinformatics
|
1471-2105
|
|
|
|
10.1186/1471-2105-10-22
|
|
CyclinPred: a SVM-based method for predicting cyclin protein sequences
|
Research Papers in Peer Reviewed Journals
|
PLOS One
|
1932-6203
|
3 |
|
|
10.1371/journal.pone.0002605
|
|
Prediction of RNA binding sites in a protein using SVM and PSSM profile
|
Research Papers in Peer Reviewed Journals
|
Proteins
|
1097-0134
|
71 |
|
|
10.1002/prot.21677
|
|
COPid: composition based protein identification
|
Research Papers in Peer Reviewed Journals
|
In Silico Biology
|
13866338, 14343207
|
8 |
|
|
|
|
Identification of DNA-binding proteins using support vector machines and evolutionary profiles
|
Research Papers in Peer Reviewed Journals
|
BMC Bioinformatics
|
1471-2105
|
8 |
|
|
10.1186/1471-2105-8-463
|
|
Support vector machine based prediction of glutathione S-transferase proteins
|
Research Papers in Peer Reviewed Journals
|
Protein and Peptide Letters
|
0929-8665, 1875-5305
|
14 |
|
|
10.2174/092986607780990046
|
|
Prediction of mitochondrial proteins using support vector machine and hidden Markov model
|
Research Papers in Peer Reviewed Journals
|
Journal of Biological Chemistry
|
0021-9258, 1083-351X
|
281 |
|
|
10.1074/jbc.M511061200
|
|
BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques
|
Research Papers in Peer Reviewed Journals
|
Nucleic Acids Research
|
0305-1048, 1362-4962
|
33 |
|
|
10.1093/nar/gki588
|
